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Hello and welcome to my academic website. Here you can find information about my research, publications, software development, and other news. I (hope to) regularly write posts on topics related to ecology, evolution and bioinformatics with the goal of documenting fun stories and useful Python and R code. I’m currently a post-doc in the Donoghue Lab at Yale University. Before starting here I […]

pyRAD Software to assemble de novo RADseq loci from restriction-site associated sequence data (RAD,ddRAD,GBS,PEddRAD,PEGBS). Alignment clustering allows for indel variation to better align highly divergent samples, merge and trim methods canbe employed to rescue overlapping paired end data, and reverse complement clustering is available to improve GBS assemblies of short overlapping contigs. simrrls Software to simulate fastQ […]

” Kratom (Mitragyna speciosa) is a tropical tree with a long history of traditional use in parts of Africa and Southeast Asia. Kratom is also known as Thom, Thang, and Biak. Its leaves and the teas brewed from them have long been used by people in that region to manage pain and opioid withdrawal and […]